GST Reconciliation Software for Marketplace Sellers
EcommReco reconciles your GSTR1, GSTR2B, and GSTR3B data against Amazon, Flipkart, and Myntra settlements automatically — catching ITC mismatches and TCS discrepancies before they turn into notices.
- GSTR1 / GSTR2B / GSTR3B matching
- TCS reconciliation (Section 52)
- Multi-GSTIN support
- Filing deadline reminders
Why GST Reconciliation Breaks Down for Ecommerce Sellers
TCS deducted by marketplaces
Amazon, Flipkart, and Myntra deduct TCS under Section 52 and report it separately, which must be reconciled against your own GST returns.
ITC mismatches on marketplace fee invoices
Commission, advertising, and logistics fee invoices from marketplaces need to be matched in GSTR2B for input tax credit, and are easy to miss at scale.
Multiple GSTINs, one business
Sellers registered across states must reconcile and file separately per GSTIN while keeping a consolidated view for management.
High order volume
Thousands of monthly orders across marketplaces make manual invoice-by-invoice reconciliation in Excel impractical.
Return and credit note handling
Returns generate credit notes that must be reflected correctly in GSTR1 and reconciled against original sales, or ITC and liability figures go wrong.
Deadline pressure
Monthly GSTR1/GSTR3B and periodic GSTR2B reconciliation deadlines leave little room for manual cleanup when numbers don’t match.
Everything You Need for GST-Compliant Books
Purpose-built for how GST actually works for marketplace sellers.
Automated GSTR Matching
Sales and settlement data is matched against GSTR1, GSTR2B, and GSTR3B automatically.
TCS Reconciliation
TCS deducted by each marketplace is reconciled against your GST returns to catch under- or over-reporting.
ITC Mismatch Detection
Marketplace fee invoices are checked against GSTR2B to flag missing or mismatched input tax credit.
Multi-GSTIN Management
Reconcile and report separately per GSTIN while viewing consolidated numbers under one PAN.
Audit-Ready Reports
Every reconciliation is backed by order-level and invoice-level data for audit and notice response.
Deadline Reminders
Automated reminders for GSTR1, GSTR3B, and TDS filing deadlines so nothing is missed.
How GST Reconciliation Works in EcommReco
- 1
Import Sales & Settlement Data
Marketplace orders, settlements, and fee invoices are imported or pulled in automatically.
- 2
Match Against GSTR Data
EcommReco reconciles sales against GSTR1, purchase/fee invoices against GSTR2B, and net liability against GSTR3B.
- 3
Exception Review
TCS mismatches, missing ITC, and unmatched invoices are flagged for review before filing.
- 4
Filing-Ready Export
Clean, reconciled data is exported in a filing-ready format for your CA or in-house compliance team.
Manual GST Reconciliation vs. EcommReco
| Task | Manual / Spreadsheets | EcommReco |
|---|---|---|
| Time per filing cycle | 3–7 days across spreadsheets | Hours, largely automated |
| TCS mismatch detection | Often found post-filing | Flagged before filing |
| ITC on marketplace fees | Frequently missed | Matched against GSTR2B automatically |
| Multi-GSTIN handling | Separate manual workbooks | Managed in one platform |
| Audit trail | Scattered across files/emails | Order-level trail in one place |
Frequently Asked Questions
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File GST returns with reconciled, audit-ready numbers
Book a free consultation and see your GSTR1, GSTR2B, and GSTR3B data reconciled automatically.